I needed to parse them for a project, so i modified it to be a one-line-per-link format. I figured someone else might be able to use it for something so I'm posting it here.
EDIT: here is the line i used:
grep -E -o '<A HREF=\"http.*?\"' <(curl http://pentest-bookmarks.googlecode.com/files/bookmarksv1.5.html) | sort -u | cut -d \" -f 2
http://academy.delmar.edu/Courses/ITSY2430/eBooks/Ettercap(ManInTheMiddleAttack-tool).pdf
http://achtbaan.nikhef.nl/27c3-stream/releases/mkv/
http://addictomatic.com/
http://andlabs.org/tools.html#dser
http://andlabs.org/tools.html#sotf
http://arachni.segfault.gr/news
http://archangelamael.blogspot.com/
http://articles.manugarg.com/arp_spoofing.pdf
http://asturio.gmxhome.de/software/sambascan2/i.html
http://avondale.good.net/dl/bd/
http://bandwidthco.com/whitepapers/netforensics/arp/EtterCap%20ARP%20Spoofing%20&%20Beyond.pdf
http://bandwidthco.com/whitepapers/netforensics/arp/Fun%20With%20EtterCap%20Filters.pdf
http://bernardodamele.blogspot.com/
http://blindelephant.sourceforge.net/
http://blog.0x0e.org/2009/11/20/pentesting-with-an-ubuntu-box/#comments
http://blog.0x3f.net/tool/keimpx-in-action/
http://blog.andlabs.org/
http://blog.c22.cc/
http://blog.commandlinekungfu.com/
http://blog.insicdesigns.com/2009/01/secure-file-upload-in-php-web-applications/
http://blog.metasploit.com/
http://blog.metasploit.com/2010/03/automating-metasploit-console.html
http://blog.metasploit.com/2010/05/introducing-metasploitable.html
http://blog.mindedsecurity.com/2010/04/good-bye-critical-jboss-0day.html
http://blog.ombrepixel.com/
http://blog.ombrepixel.com/post/2009/05/06/Lotus-Notes/Domino-Security
http://blog.portswigger.net/
http://blog.securitymonks.com/2009/08/15/whats-in-your-folder-security-cheat-sheets/
http://blog.sipvicious.org/
http://blog.skeptikal.org/
http://blog.skeptikal.org/2009/11/adobe-responds-sort-of.html
http://blog.spiderlabs.com/
http://blog.zenone.org/2009/03/pci-compliance-disable-sslv2-and-weak.html
http://bright-shadows.net/
http://capture.thefl.ag/calendar/
http://carnal0wnage.attackresearch.com/node/410
http://carnal0wnage.attackresearch.com/node/436?utm_source=twitterfeed&utm_medium=twitter
http://carnal0wnage.blogspot.com/
http://carnal0wnage.blogspot.com/2007/07/using-sqid-sql-injection-digger-to-look.html
http://centralops.net/co/
http://cfunited.com/2009/files/presentations/254_ShlomyGantz_August2009_HackProofingColdFusion.pdf
http://cirt.net/passwords
http://cirt.net/ports_dl.php?export=services
http://clez.net/
http://code.google.com/edu/languages/google-python-class/index.html
http://code.google.com/p/fimap/wiki/WindowsAttack
http://code.google.com/p/fm-fsf/
http://code.google.com/p/fuzzdb/
http://code.google.com/p/it-sec-catalog/wiki/Exploitation
http://code.google.com/p/javasnoop/
http://code.google.com/p/keimpx/
http://code.google.com/p/msf-hack/wiki/WmapNikto
http://code.google.com/p/owaspbwa/wiki/ProjectSummary
http://code.google.com/p/pinata-csrf-tool/
http://code.google.com/p/pyrit/
http://code.google.com/p/skipfish/
http://code.google.com/p/wavsep/downloads/list
http://contest.korelogic.com/wordlists.html
http://cr.yp.to/2004-494.html
http://crackme.cenzic.com/Kelev/view/home.php
http://crypto.stanford.edu/cs142/
http://crypto.stanford.edu/cs155/
http://cseweb.ucsd.edu/classes/wi09/cse227/
http://ctf.hcesperer.org/
http://cve.mitre.org/
http://cvedetails.com/
http://demo.testfire.net/
http://dev.tangocms.org/issues/237
http://deviating.net/
http://en.wikibooks.org/wiki/Metasploit/MeterpreterClient#download
http://en.wikipedia.org/wiki/IPv4_subnetting_reference
http://entitycube.research.microsoft.com/
http://esploit.blogspot.com/
http://ex.ploit.net/f20/tricks-tips-bypassing-image-uploaders-t3hmadhatt3r-38/
http://exploit.co.il/
http://feoh.tistory.com/22
http://ferruh.mavituna.com/sql-injection-cheatsheet-oku/
http://flack.hkpco.kr/
http://forum.intern0t.net/
http://forum.intern0t.net/web-hacking-war-games/112-cross-site-scripting-attack-defense-guide.html
http://gnacktrack.co.uk/download.php
http://gse-compliance.blogspot.com/2008/07/netcat.html
http://gynvael.coldwind.pl/
http://h.ackack.net/cheat-sheets/netcat
http://h30507.www3.hp.com/t5/Following-the-White-Rabbit-A/Adobe-ColdFusion-s-Directory-Traversal-Disaster/ba-p/81964
http://ha.ckers.org/sqlinjection/
http://hackerfantastic.com/
http://hackme.ntobjectives.com/
http://hakin9.org/
http://hashcrack.blogspot.com/
http://heideri.ch/jso/#javascript
http://heorot.net/livecds/
http://i-web.i.u-tokyo.ac.jp/edu/training/ss/lecture/new-documents/Lectures/
http://i8jesus.com/
http://ictf.cs.ucsb.edu/
http://infond.blogspot.com/2010/05/toturial-footprinting.html
http://informatica.uv.es/~carlos/docencia/netinvm/
http://intrepidusgroup.com/insight/mallory/
http://intruded.net/
http://isc.sans.edu/diary.html?storyid=1229
http://isc.sans.edu/diary.html?storyid=2376
http://isc.sans.edu/diary.html?storyid=9397
http://jeremiahgrossman.blogspot.com/
http://junker.org/~tkh16/ncat-for-netcat-users.php
http://lab.mediaservice.net/notes_more.php?id=MSSQL
http://labs.neohapsis.com/2008/07/21/local-file-inclusion-%E2%80%93-tricks-of-the-trade/
http://laramies.blogspot.com/
http://layerone.info/archives/2009/Joe%20McCray%20-%20Advanced%20SQL%20Injection%20-%20L1%202009.pdf
http://lcamtuf.coredump.cx/strikeout/
http://marc.info/?l=john-users&m=121444075820309&w=2
http://mariano-graziano.llab.it/docs/report.pdf
http://mcafeeseminar.com/focus/downloads/Live_Hacking.pdf
http://media.techtarget.com/searchUnifiedCommunications/downloads/Seven_Deadliest_UC_Attacks_Ch3.pdf
http://memset.wordpress.com/
http://meterpreter.illegalguy.hostzi.com/
http://midnightresearch.com/projects/search-engine-assessment-tool/#downloads
http://milo2012.wordpress.com/2009/09/27/xlsinjector/
http://msdn.microsoft.com/en-us/library/aa478971.aspx
http://msmvps.com/blogs/alunj/archive/2010/07/07/1773441.aspx
http://myne-us.blogspot.com/
http://myne-us.blogspot.com/2010/08/from-0x90-to-0x4c454554-journey-into.html
http://mywiki.wooledge.org/BashPitfalls
http://news.electricalchemy.net/2009/10/cracking-passwords-in-cloud.html
http://nmap.org/
http://nmap.org/ncrack/
http://nmap.org/nsedoc/
http://nvd.nist.gov/
http://old.justinshattuck.com/2007/01/18/mysql-injection-cheat-sheet/
http://ophcrack.sourceforge.net/
http://osvdb.org/
http://packetstormsecurity.org/Crackers/wordlists/
http://packetstormsecurity.org/UNIX/scanners/lfi-rfi2.txt
http://packetstormsecurity.org/UNIX/scanners/rfiscan2.py.txt
http://packetstormsecurity.org/files/view/69896/unicode-fun.txt
http://packetstormsecurity.org/files/view/95399/dotdotpwn-v2.1.tar.gz
http://packetstormsecurity.org/papers/wireless/cracking-air.pdf
http://pastie.org/840199
http://pauldotcom.com/2010/02/running-a-command-on-every-mac.html
http://pauldotcom.com/2010/03/nessus-scanning-through-a-meta.html
http://pentest.cryptocity.net/
http://pentestmonkey.net/blog/
http://pentestmonkey.net/blog/mssql-sql-injection-cheat-sheet/
http://perishablepress.com/press/2006/01/10/stupid-htaccess-tricks/
http://picfog.com/
http://pipl.com/
http://preachsecurity.blogspot.com/
http://punter-infosec.com/
http://pynstrom.net/holynix.php
http://r00tsec.blogspot.com/2011/03/pr10-08-various-xss-and-information.html
http://readlist.com/lists/insecure.org/nmap-dev/1/7779.html
http://ref.x86asm.net/index.html
http://resources.infosecinstitute.com/
http://reusablesec.blogspot.com/
http://rmccurdy.com/scripts/Metasploit%20meterpreter%20cheat%20sheet%20reference.html
http://rstcenter.com/forum/22324-hacking-without-tools-windows.rst
http://rubular.com/
http://samsclass.info/124/124_Sum09.shtml
http://samurai.inguardians.com/
http://sbdtools.googlecode.com/files/Nmap5%20cheatsheet%20eng%20v1.pdf
http://sbdtools.googlecode.com/files/hping3_cheatsheet_v1.0-ENG.pdf
http://searchwww.sec.gov/EDGARFSClient/jsp/EDGAR_MainAccess.jsp
http://secdocs.lonerunners.net/
http://seclists.org/fulldisclosure/2006/Jun/508
http://seclists.org/metasploit/
http://seclists.org/nmap-dev/2009/q1/581
http://seclists.org/pen-test/2002/Nov/43
http://secunia.com/
http://securestate.blogspot.com/2010/08/xfs-101-cross-frame-scripting-explained.html?utm_source=twitterfeed&utm_medium=twitter
http://security.ucla.edu/pages/Security_Talks
http://securityandrisk.blogspot.com/
http://securityoverride.com/articles.php?article_id=1&article=The_Complete_Guide_to_SQL_Injections
http://securityoverride.com/forum/index.php
http://securityreliks.wordpress.com/
http://securitytube.net/Deploying-Metasploit-as-a-Payload-on-a-Rooted-Box-video.aspx
http://securitytube.net/Nmap-Scripting-Engine-Primer-video.aspx
http://shelldorado.com/shelltips/beginner.html
http://showmedo.com/videotutorials/python
http://shsc.info/FileUploadSecurity
http://sickness.tor.hu/
http://sinbadsecurity.blogspot.com/2008/10/ms-sql-server-password-recovery.html
http://sirdarckcat.blogspot.com/
http://sirdarckcat.blogspot.com/2009/08/our-favorite-xss-filters-and-how-to.html
http://skipease.com/
http://sla.ckers.org/forum/index.php
http://sla.ckers.org/forum/list.php?2
http://sla.ckers.org/forum/read.php?24,33903
http://smashthestack.org/
http://socialmention.com/
http://sourceforge.net/projects/ajaxshell/
http://sourceforge.net/projects/belch/files/
http://sourceforge.net/projects/hashkill/
http://sourceforge.net/projects/lampsecurity/files/
http://sourceforge.net/projects/rips-scanner/
http://sourceforge.net/projects/thebutterflytmp/
http://sourceforge.net/projects/virtualhacking/files/
http://sourceforge.net/projects/websecuritydojo/
http://sourceforge.net/projects/ws-attacker/files/
http://sourceforge.net/projects/yokoso/
http://sqid.rubyforge.org/#next
http://sqlmap.sourceforge.net/
http://sqlzoo.net/hack/
http://ss64.com/nt/
http://stuff.mit.edu/iap/2009/#websecurity
http://sumolinux.suntzudata.com/
http://synjunkie.blogspot.com/2008/03/command-line-ninjitsu.html
http://taosecurity.blogspot.com/
http://technotales.wordpress.com/2009/06/14/netcat-tricks/
http://tenable.com/products/nessus
http://testasp.vulnweb.com/
http://testaspnet.vulnweb.com/
http://testphp.vulnweb.com/
http://theultimates.com/
http://threatpost.com/en_us/blogs/hd-moore-metasploit-exploitation-and-art-pen-testing-040210
http://tools.securitytube.net/index.php?title=Main_Page
http://toorcon.org/pres12/3.pdf
http://trac.happypacket.net/
http://translate.google.com/translate?hl=en&sl=es&u=http://xss.codeplex.com/releases/view/43170&prev=/search%3Fq%3Dhttp://www.hackingeek.com/2010/08/x5s-encuentra-fallos-xss-lfi-rfi-en-tus.html%26hl%3Den&rurl=translate.google.com&twu=1
http://twapperkeeper.com/index.php
http://tweepsearch.com/
http://tweepz.com/
http://uptime.netcraft.com/
http://video.google.com/videoplay?docid=4379894308228900017&q=owasp#
http://video.google.com/videoplay?docid=4994651985041179755&ei=_1k4TKj-PI-cqAPioJnKDA&q=deepsec#
http://vimeo.com/16852783
http://vimeo.com/16925188
http://vimeo.com/3418947
http://vimeo.com/user2720399
http://visi.kenshoto.com/
http://voidnetwork.org/5ynL0rd/darkc0de/python_script/dorkScan.html
http://w3af.sourceforge.net/
http://web.archive.org/web/20080822123152/http://www.webapptest.org/ms-access-sql-injection-cheat-sheet-EN.html
http://web.archive.org/web/20101112061524/http://seclists.org/pen-test/2003/May/0074.html
http://web.mac.com/opticrealm/iWeb/asurobot/My%20Cyber%20Attack%20Papers/My%20Cyber%20Attack%20Papers_files/ettercap_Nov_6_2005-1.pdf
http://websec.files.wordpress.com/2010/11/sqli2.pdf
http://websec.wordpress.com/
http://websec.wordpress.com/2010/02/22/exploiting-php-file-inclusion-overview/
http://websec.wordpress.com/2010/03/19/exploiting-hard-filtered-sql-injections/
http://websecuritytool.codeplex.com/documentation?referringTitle=Home
http://wepma.blogspot.com/
http://whatthefuckismyinformationsecuritystrategy.com/
http://whois.webhosting.info/
http://wirewatcher.wordpress.com/
http://www-inst.eecs.berkeley.edu/~cs161/sp11/
http://www.123people.com/
http://www.12robots.com/index.cfm/2010/9/14/Whats-Possible-with-XSS--Security-Series-81
http://www.abysssec.com/blog/2010/05/past-present-future-of-windows-exploitation/
http://www.acunetix.com/cross-site-scripting/scanner.htm
http://www.alphaonelabs.com/
http://www.antionline.com/archive/index.php/t-230603.html
http://www.attackvector.org/
http://www.awarenetwork.org/home/rattle/source/python/exe2bat.py
http://www.backbox.org/
http://www.backtrack-linux.org/
http://www.backtrack-linux.org/forums/
http://www.badstore.net/
http://www.binary-auditing.com/
http://www.bindshell.net/tools/beef
http://www.blackhat.com/presentations/bh-dc-10/Ames_Colin/BlackHat-DC-2010-colin-david-neurosurgery-with-meterpreter-wp.pdf
http://www.blackhat.com/presentations/bh-dc-10/Bannedit/BlackHat-DC-2010-Bannedit-Advanced-Command-Injection-Exploitation-1-wp.pdf
http://www.blackhat.com/presentations/bh-dc-10/Egypt/BlackHat-DC-2010-Egypt-UAV-slides.pdf
http://www.blackhat.com/presentations/bh-europe-03/bh-europe-03-valleri.pdf
http://www.bonsai-sec.com/en/research/moth.php
http://www.catonmat.net/blog/learning-python-programming-language-through-video-lectures/
http://www.cheat-sheets.org/
http://www.commonexploits.com/
http://www.contextis.co.uk/resources/tools/clickjacking-tool/
http://www.corelan.be/
http://www.coresecurity.com/files/attachments/Core_Define_and_Win_Cmd_Line.pdf
http://www.cs.rpi.edu/academics/courses/spring10/csci4971/
http://www.cs.sjtu.edu.cn/~kzhu/cs490/
http://www.cs.ucsb.edu/~adoupe/static/black-box-scanners-dimva2010.pdf
http://www.cs.ucsb.edu/~vigna/courses/cs279/
http://www.cs.uiuc.edu/class/sp08/cs498sh/slides/dsniff.pdf
http://www.darknet.org.uk/
http://www.darknet.org.uk/2010/09/inspathx-tool-for-finding-path-disclosure-vulnerabilities/
http://www.darkoperator.com/
http://www.darkoperator.com/blog/2009/4/24/metadata-enumeration-with-foca.html
http://www.defcon.org/images/defcon-17/dc-17-presentations/defcon-17-sam_bowne-hijacking_web_2.0.pdf
http://www.dest-unreach.org/socat/
http://www.digininja.org/
http://www.digininja.org/blog/when_all_you_can_do_is_read.php
http://www.divineinvasion.net/authforce/
http://www.domaintools.com/
http://www.dvwa.co.uk/
http://www.ece.cmu.edu/~dbrumley/courses/18732-f09/
http://www.edge-security.com/metagoofil.php
http://www.edge-security.com/theHarvester.php
http://www.eeye.com/products/retina/community
http://www.elitehackers.info/forums/
http://www.ericheitzman.com/passwd/passwords/
http://www.ethicalhacker.net/
http://www.ethicalhacker.net/component/option,com_smf/Itemid,54/topic,6131.msg32678/#msg32678
http://www.ethicalhacker.net/component/option,com_smf/Itemid,54/topic,6158.0/
http://www.ethicalhacker.net/content/view/122/2/
http://www.evilsql.com/main/index.php
http://www.exploit-db.com/
http://www.exploit-db.com/google-dorks/
http://www.exploit-db.com/webapps/
http://www.fastandeasyhacking.com/
http://www.fiddler2.com/fiddler2/
http://www.foofus.net/?page_id=63
http://www.foofus.net/jmk/medusa/medusa.html
http://www.foofus.net/~jmk/medusa/medusa-smbnt.html
http://www.gdssecurity.com/l/b/
http://www.gdssecurity.com/l/b/2010/08/10/constricting-the-web-the-gds-burp-api/
http://www.giac.org/certified_professionals/practicals/gsec/0810.php
http://www.glassdoor.com/index.htm
http://www.gnucitizen.org/blog/
http://www.gnucitizen.org/blog/agile-hacking-a-homegrown-telnet-based-portscanner/
http://www.gnucitizen.org/blog/coldfusion-directory-traversal-faq-cve-2010-2861/?utm_source=feedburner&utm_medium=feed&utm_campaign=Feed%3A+gnucitizen+%28GNUCITIZEN%29&utm_content=Twitter
http://www.gnucitizen.org/blog/cross-site-file-upload-attacks/
http://www.google.com/#hl=en&q=bypassing+upload+file+type&start=40&sa=N&fp=a2bb30ecf4f91972
http://www.governmentsecurity.org/forum/
http://www.grmn00bs.com/
http://www.hackernews.com/
http://www.hackersforcharity.org/ghdb/
http://www.hackfromacave.com/articles_and_adventures/katana_v2_release.html
http://www.hacking-lab.com/news/newspage/livecd-v4.3-available.html
http://www.hackthissite.org/forums/index.php
http://www.hideaway.net/2007/07/hacking-oracle-application-servers.html
http://www.iac.iastate.edu/iasg/libarchive/0910/The_Magic_of_Ettercap/The_Magic_of_Ettercap.pdf
http://www.iana.org/assignments/port-numbers
http://www.iexploit.org/
http://www.ikkisoft.com/stuff/SMH_XSS.txt
http://www.indepthdefense.com/2009/01/metasploit-visual-basic-payloads-in.html
http://www.indepthdefense.com/2009/02/reverse-pivots-with-metasploit-how-not.html
http://www.infosecwriters.com/hhworld/hh8/csstut.htm
http://www.infosecwriters.com/text_resources/pdf/Netcat_for_the_Masses_DDebeer.pdf
http://www.inguardians.com/research/docs/Skoudis_pentestsecrets.pdf
http://www.ipolicynetworks.com/technology/files/TikiWiki_jhot.php_Script_File_Upload_Security_Bypass_Vulnerability.html
http://www.irongeek.com/i.php?page=security/mutillidae-deliberately-vulnerable-php-owasp-top-10
http://www.irongeek.com/i.php?page=videos/aide-winter-2011
http://www.irongeek.com/i.php?page=videos/metasploit-class
http://www.irongeek.com/i.php?page=videos/network-sniffers-class
http://www.irongeek.com/i.php?page=videos/password-exploitation-class
http://www.jigsaw.com/
http://www.justanotherhacker.com/projects/graudit.html
http://www.kioptrix.com/blog/
http://www.krazl.com/blog/?p=3
http://www.leetupload.com/database/Misc/Papers/Asta%20la%20Vista/18.Ettercap_Spoof.pdf
http://www.linuxfromscratch.org/
http://www.linuxsecurity.com/docs/PDF/dsniff-n-mirror.pdf
http://www.linuxsurvival.com/
http://www.madirish.net/?article=470
http://www.madirish.net/index.html
http://www.matriux.com/
http://www.mavetju.org/unix/dnstracer-man.php
http://www.mcafee.com/us/downloads/free-tools/hacme-casino.aspx
http://www.mcafee.com/us/downloads/free-tools/hacmebooks.aspx
http://www.mcafee.com/us/downloads/free-tools/hacmeshipping.aspx
http://www.mcafee.com/us/downloads/free-tools/hacmetravel.aspx
http://www.mcgrewsecurity.com/
http://www.md5this.com/list.php?
http://www.metasploit.com/modules/auxiliary/scanner/http/vmware_server_dir_trav
http://www.mindcenter.net/uploads/ECCE101.pdf
http://www.more.net/sites/default/files/2010JohnStrandKeynote.pdf
http://www.mozilla.com/en-US/about/
http://www.mozilla.com/en-US/firefox/central/
http://www.mozilla.com/en-US/firefox/community/
http://www.mozilla.com/en-US/firefox/customize/
http://www.mozilla.com/en-US/firefox/help/
http://www.my-ip-neighbors.com/
http://www.nessus.org/plugins/index.php?view=single&id=10404
http://www.nessus.org/plugins/index.php?view=single&id=10673
http://www.nessus.org/plugins/index.php?view=single&id=10862
http://www.nessus.org/plugins/index.php?view=single&id=11413
http://www.nessus.org/plugins/index.php?view=single&id=11790
http://www.nessus.org/plugins/index.php?view=single&id=12052
http://www.nessus.org/plugins/index.php?view=single&id=12204
http://www.nessus.org/plugins/index.php?view=single&id=12205
http://www.nessus.org/plugins/index.php?view=single&id=12209
http://www.nessus.org/plugins/index.php?view=single&id=15456
http://www.nessus.org/plugins/index.php?view=single&id=15962
http://www.nessus.org/plugins/index.php?view=single&id=18021
http://www.nessus.org/plugins/index.php?view=single&id=18027
http://www.nessus.org/plugins/index.php?view=single&id=19402
http://www.nessus.org/plugins/index.php?view=single&id=19408
http://www.nessus.org/plugins/index.php?view=single&id=21564
http://www.nessus.org/plugins/index.php?view=single&id=21689
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